Index

A

addat() (mango.constants.bin_count method) addpid (class in mango.managers) addpid() (mango.errors.error method) addtorestart() (mango.io.write_data method) align() (mango.pp.com.CoM_motion_rm method) analysis() (mango.pp.acf.Autocorr method) angle() (mango.tools.visualiser.scene_setup method)

annihilate() (in module mango.hdf5io) append (mango.io.Data attribute) array_vars() (in module mango.arguments) arrows() (mango.tools.visualiser.scene_setup method) asciistring() (in module mango.constants) at_least2d_end() (in module mango.pp.util) Autocorr (class in mango.pp.acf)

B

backup() (in module mango.hdf5io) backupcheck() (in module mango.hdf5io) bar() (mango.progress.prog method) bin_count (class in mango.constants)

bin_count_setup() (mango.position.force method) boolconvert() (in module mango.constants) boundary (mango.position.position attribute) boxsize (mango.boundaries.periodic attribute)

C

calc_wrap() (in module mango.magnetic_motion) calcsigmalim() (in module mango.arguments) calculate (class in mango.magnetic_motion) camera() (mango.tools.visualiser.scene_setup method) captured_output() (in module mango.pp.util) chunkindex() (in module mango.hdf5io) clear() (mango.constants.const method) close() (mango.imports.matplotlib static method) col() (mango.imports.matplotlib method) col_check() (in module mango.arguments) collectdata() (in module mango.pp.main) column_manip() (in module mango.arguments)

CoM_motion_rm (class in mango.pp.com) comb (mango.position.force attribute) Communal (class in mango.position) cone_rotation() (mango.tools.visualiser.scene_setup method) connect() (mango.pp.util.onevent method) const (class in mango.constants) conv() (mango.pp.acf.Autocorr method) count() (mango.errors.error method) countneel (class in mango.position) CPU() (in module mango.constants) cr_arr2() (mango.tools.visualiser.scene_setup method) cr_bsph() (mango.tools.visualiser.scene_setup method) cutter() (mango.magnetic_motion.save_m method)

D

Data (class in mango.io) Dataarrays (class in mango.pp.util) DBG (mango.boundaries.periodic attribute) dcall() (mango.debug.debug method) debug (class in mango.debug) deltamag() (mango.position.position method) dictfind() (in module mango.pp.util)

dictionary_creation() (in module mango.magnetic_motion) dictionarys() (mango.magnetic_motion.calculate method) disksaveloop() (mango.magnetic_motion.calculate method) dist (mango.boundaries.periodic attribute) distance() (mango.boundaries.periodic method) distance_full() (mango.boundaries.periodic method) dmag (mango.position.force attribute)

E

echo() (mango.constants.const method) ecol() (in module mango.errors) EMPI() (in module mango.constants) end (class in mango.time) END() (mango.progress.prog static method) endproc() (mango.errors.error method) energy (class in mango.position) energy() (mango.pp.util.Dataarrays method) energy_vars() (mango.position.energy method)

epsilon (mango.position.force attribute) epsilon24 (mango.position.force attribute) error (class in mango.errors) Error() (mango.constants.const method) errorbarpicker() (mango.imports.matplotlib static method) errorhandler() (mango.managers.Server method) estrings() (mango.position.force method) (mango.position.position method) ExitQuiet

F

ff_mag() (in module mango.potentials.magliq_debug) (mango.position.force method) ff_trans() (in module mango.potentials.LennardJones6_12) (in module mango.potentials.magliq_debug) (mango.position.force method) fftw() (in module mango.imports) field() (in module mango.magnetic_motion) fig_d() (mango.pp.util.onevent static method) file() (mango.magnetic_motion.save_m method) file_write() (in module mango.io) filenaming() (in module mango.arguments) finaliteration() (mango.magnetic_motion.calculate method) finishdata() (mango.magnetic_motion.calculate method) finished() (mango.time.end method) firststep() (mango.magnetic_motion.calculate method)

fixparam() (in module mango.arguments) flgorvar() (mango.constants.getkeywords method) fmag (mango.position.force attribute) fmag_temp (mango.position.force attribute) force (class in mango.position) force_step() (mango.position.position method) force_trans (mango.position.force attribute) force_transR (mango.position.force attribute) force_vars() (mango.position.force method) fstr1 (mango.position.force attribute) fstr2 (mango.position.force attribute) fstr3 (mango.position.force attribute) fstr4 (mango.position.force attribute) fstr5 (mango.position.force attribute) fstr6ia (mango.position.force attribute) ftrans (mango.position.force attribute)

G

get_allattr() (in module mango.hdf5io) get_angular() (in module mango.pp.com) get_data() (mango.tools.visualiser.scene_setup method) get_expon() (in module mango.pp.util) get_inertia() (in module mango.pp.com) get_particles() (in module mango.magnetic_motion) get_ppflags() (in module mango.pp.main) get_ppvars() (in module mango.pp.main) get_restartdata() (in module mango.io) get_suscep() (in module mango.pp.acf) getdist (mango.boundaries.periodic attribute)

gethelp() (in module mango.arguments) getkeywords (class in mango.constants) getlocalprocs() (in module mango.multiproc) getlocation() (in module mango.pp.util) getpotentials() (in module mango.imports) getrestart() (mango.io.read_data method) gettimegone() (mango.time.end method) gettimeleft() (mango.time.end method) getvar() (in module mango.io) getvars() (in module mango.pp.util) grace (class in mango.time) GT() (in module mango.constants)

H

handler() (mango.managers.Server method) header() (mango.constants.const method) hfia (mango.position.force attribute) hfia_temp (mango.position.force attribute) hfja (mango.position.force attribute)

hfja_temp (mango.position.force attribute) hh_mag() (in module mango.potentials.magliq_debug) (mango.position.force method) hind (mango.position.force attribute) htuple() (mango.imports.matplotlib method)

I

inertia_angular() (mango.pp.com.CoM_motion_rm method) init_pot() (mango.position.position method) initialconditions() (mango.position.position method) initpos() (in module mango.initpositions) inputregen() (in module mango.io) inquirer() (in module mango.imports)

integrate() (in module mango.magnetic_motion) interactive_getfiles() (in module mango.pp.util) interactive_help() (in module mango.arguments) INTTERM() (in module mango.constants) ismpi() (in module mango.multiproc) iterationadjust() (mango.magnetic_motion.calculate method)

J

ja (mango.position.force attribute)

jump() (mango.constants.const method)

K

kinetic_temperature() (in module mango.pp.main)

L

LCT() (in module mango.constants) leng (mango.constants.bin_count attribute) length() (mango.pp.util.Dataarrays method) lengthcheck() (in module mango.pp.main) (mango.io.read_data method) (mango.pp.util.loader method) limit (mango.position.force attribute) lind (mango.position.force attribute)

line_d() (mango.pp.util.onevent static method) list_add_arguments() (in module mango.arguments) lj (mango.position.force attribute) lj6 (mango.position.force attribute) load() (in module mango.hdf5io) loader (class in mango.pp.util) long_ia (mango.position.force attribute) long_ja (mango.position.force attribute)

M

magi (mango.position.force attribute) magj (mango.position.force attribute) magnetisation_step() (mango.position.position method) main() (in module mango.mango) (in module mango.tools.visualiser) makevideo() (mango.tools.visualiser.scene_setup method) mango.arguments module mango.boundaries module mango.constants module mango.debug module mango.errors module mango.hdf5io module mango.imports module mango.initpositions module mango.io module mango.magnetic_motion module mango.managers module mango.mango module mango.multiproc module mango.position module mango.potentials.LennardJones6_12 module mango.potentials.magliq_debug module mango.pp.acf module mango.pp.com module mango.pp.main module

mango.pp.util module mango.progress module mango.time module mango.tools.string_generation module mango.tools.visualiser module matplotlib (class in mango.imports) memory() (mango.magnetic_motion.save_m method) memorysaveloop() (mango.magnetic_motion.calculate method) module mango.arguments mango.boundaries mango.constants mango.debug mango.errors mango.hdf5io mango.imports mango.initpositions mango.io mango.magnetic_motion mango.managers mango.mango mango.multiproc mango.position mango.potentials.LennardJones6_12 mango.potentials.magliq_debug mango.pp.acf mango.pp.com mango.pp.main mango.pp.util mango.progress mango.time mango.tools.string_generation mango.tools.visualiser momenta() (mango.pp.util.Dataarrays method) momentum_step() (mango.position.position method) move_to() (in module mango.tools.visualiser) mp_handle() (in module mango.multiproc) mp_handler() (in module mango.multiproc) MPL() (in module mango.constants) MTrnd() (in module mango.constants)

N

neel() (mango.position.position method) nestedDict() (in module mango.constants) new_vars() (in module mango.magnetic_motion)

notebook_help() (in module mango.arguments) notraceback() (in module mango.errors) num_iters() (in module mango.magnetic_motion)

O

on_key_press() (mango.tools.visualiser.scene_setup method) on_mouse_move() (mango.tools.visualiser.scene_setup method) on_timer() (mango.tools.visualiser.scene_setup method)

onevent (class in mango.pp.util) onkey() (mango.pp.util.onevent method) onpick() (mango.pp.util.onevent method) optimise() (mango.position.position method)

P

parse() (in module mango.arguments) parse_in() (in module mango.arguments) pbc (mango.boundaries.periodic attribute) periodic (class in mango.boundaries) posfile() (in module mango.initpositions) position (class in mango.position) position_step() (mango.position.position method) positions() (mango.tools.visualiser.scene_setup method) posones (mango.boundaries.periodic attribute)

prerange() (mango.magnetic_motion.calculate method) prettyplot() (mango.imports.matplotlib method) print() (mango.errors.error method) PROF() (in module mango.constants) profile() (in module mango.debug) prog (class in mango.progress) Prog() (mango.constants.const method) proghandler() (mango.managers.Server method) progress_report() (mango.magnetic_motion.calculate method) propagate() (mango.position.position method)

Q

Quiet

R

r_unit() (in module mango.tools.string_generation) randomnumbers() (mango.magnetic_motion.calculate method) read() (in module mango.imports) (in module mango.tools.visualiser) (mango.io.read_data method) read_data (class in mango.io) read_inputfile() (in module mango.io) readin() (in module mango.pp.main) remove_CoMm() (in module mango.pp.com) remove_state() (mango.magnetic_motion.save_m method) reprint() (mango.errors.Reprinter method) Reprinter (class in mango.errors) reseed() (mango.constants.const method) reset_wrap() (mango.boundaries.periodic method) reshape() (mango.constants.bin_count method)

restart() (mango.io.write_data method) (mango.magnetic_motion.save_m method) restart_gen() (in module mango.io) restart_in() (in module mango.arguments) restartfile_read() (in module mango.io) rij (mango.position.force attribute) rij3 (mango.position.force attribute) rij4 (mango.position.force attribute) rijz (mango.position.force attribute) rmemptyfile() (in module mango.constants) rotate_array() (mango.tools.visualiser.scene_setup method) rotate_to() (in module mango.tools.visualiser) rotdp() (mango.tools.visualiser.scene_setup static method) run() (mango.magnetic_motion.calculate method) (mango.position.countneel method)

S

sanity() (in module mango.arguments) sanity_checks() (in module mango.magnetic_motion) save() (in module mango.hdf5io) save_m (class in mango.magnetic_motion) save_suscep() (in module mango.pp.acf) savechunk() (mango.magnetic_motion.calculate method) scene() (mango.tools.visualiser.scene_setup method) scene_setup (class in mango.tools.visualiser) scfloop() (mango.position.position method) separater() (in module mango.io) Server (class in mango.managers) serverwrapper (class in mango.managers) set_accuracy() (mango.constants.const method) set_attr() (mango.position.Communal method) set_const() (in module mango.arguments) set_debug() (in module mango.debug) set_pot() (mango.position.position method) setdefaults() (in module mango.arguments) setup() (in module mango.mango) (mango.boundaries.periodic method) (mango.errors.error method) (mango.io.write_data method) (mango.magnetic_motion.calculate method) (mango.magnetic_motion.save_m method) (mango.progress.prog method)

setup_full() (mango.boundaries.periodic method) shape (mango.constants.bin_count attribute) showg() (mango.imports.matplotlib static method) showgraph() (in module mango.pp.util) sigma (mango.boundaries.periodic attribute) (mango.position.force attribute) sigma_err (mango.boundaries.periodic attribute) skiploop() (mango.magnetic_motion.calculate method) SmartFormatter (class in mango.arguments) spinner() (mango.tools.visualiser.scene_setup static method) spinner2() (mango.tools.visualiser.scene_setup static method) splitnode() (in module mango.multiproc) splitvars() (in module mango.arguments) start (class in mango.time) start_server() (in module mango.managers) start_timer() (mango.debug.debug method) starttime() (mango.magnetic_motion.calculate method) state() (mango.magnetic_motion.save_m method) stochastic_step() (mango.position.position method) stop() (mango.magnetic_motion.save_m method) strings() (in module mango.tools.string_generation) subtractat() (mango.constants.bin_count method) sus() (mango.pp.util.Dataarrays method) suscep() (mango.imports.matplotlib method) suscep_align() (mango.pp.com.CoM_motion_rm method) switch() (in module mango.constants)

T

Test() (mango.progress.prog static method) timing() (in module mango.debug) translate_to() (in module mango.tools.visualiser) translucent() (mango.tools.visualiser.scene_setup static method)

tri (mango.boundaries.periodic attribute) triag_ind (mango.position.force attribute) twoparticlesinabox() (in module mango.initpositions) txt_data() (in module mango.io) txtread() (mango.io.read_data method)

U

UCODE() (in module mango.constants) UIP() (in module mango.constants)

unitv (mango.position.force attribute) urllj() (in module mango.initpositions)

V

v_print (class in mango.debug) (class in mango.tools.string_generation) verbosity() (in module mango.arguments) vv_mag() (in module mango.potentials.magliq_debug) (mango.position.energy method)

vv_trans() (in module mango.potentials.LennardJones6_12) (in module mango.potentials.magliq_debug) (mango.position.energy method)

W

wrap (mango.boundaries.periodic attribute) wrapping() (mango.boundaries.periodic method)

write() (in module mango.imports) (mango.io.write_data method) write_data (class in mango.io)

X

xyz() (mango.pp.util.Dataarrays method) xyz_align() (mango.pp.com.CoM_motion_rm method)

xyz_write() (in module mango.io) xyzppread() (mango.io.read_data method) xyzread() (mango.io.read_data method)

Z

zeros (mango.position.force attribute)